Cloud-native genomic dataframes and batch computing

C library for high-throughput sequencing data formats

✂️ ⚡ Rapid haploid variant calling and core genome alignment

This vCard PHP library can easily parse or generate/export vCards as .vcf

Haplotype VCF comparison tools

cython + htslib == fast VCF and BCF processing

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Toolset for SV simulation, comparison and filtering

annotate a VCF with other VCFs/BEDs/tabixed files

Structural variant toolkit for VCFs

Genome browser and variant annotation

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

A Java API for high-throughput sequencing data (HTS) formats.

Personal Cancer Genome Reporter (PCGR)

Syntax highlighting for computational biology

a calendar server aiming to be simple, fast and passwordless

A collection of scripts and notes related to genomics and bioinformatics

Automate deployment and configuration of nested VMware Software-Defined Data Center environments including solutions like vSphere, vSAN, NSX, vSphere Kubernetes Service, Avi Load Balancer, Aria Operations for Logs, VCF 9, VyOS, and ISC BIND.

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too