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Commits on Aug 28, 2025

• For the VCF rlen calculation, only use SVLEN for DEL, DUP and CNV symbolic alleles (#1942)

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  daviesrob

  authored
  ca3a57b

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Commits on Aug 18, 2025

• Simplify setting next[] in bam_next_basemod

  jkbonfield

  committed
  d677f34

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• Correct bam_next_basemod with explicit calling and HTS_MOD_REPORT_UNCHECKED.

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  jkbonfield

  committed
  d13a46c

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Commits on Aug 6, 2025

• Fix segfault on an empty valid MM tag. (PR #1939)

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  whitwham

  authored
  199e45c

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Commits on Jul 14, 2025

• Merge version number bump and NEWS file from master

  daviesrob

  committed
  525cbbd

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• Release 1.22.1

  daviesrob

  committed
  c1f35d6

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Commits on Jul 10, 2025

• NEWS updates for 1.22.1 release

  daviesrob

  committed
  b2a06e3

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• Update to htscodecs v1.6.4

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  daviesrob

  authored and

  jkbonfield

  committed
  a21c910

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Commits on Jul 3, 2025

• Ensure sam_hdr_dup() always allocates sam_hdr_t::text

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  daviesrob

  committed
  7582a01

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• Guard against memcpying 0-length spans

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  blawrence-ont

  authored and

  daviesrob

  committed
  4b58c6b

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• Permit better fuzzing detection and fix block size growth.

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  jkbonfield

  authored and

  daviesrob

  committed
  6a399ca

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• Make CRAM codecs with encoding E_BYTE_ARRAY do bounds checking on out.

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  jkbonfield

  authored and

  daviesrob

  committed
  843ca7f

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Commits on Jul 2, 2025

• Improved error handling in cram_compress_block2. (PR #1931)

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  jkbonfield

  authored
  09c89d8

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Commits on Jun 26, 2025

• Fix typo in ref-cache configure check for libcurl (#1929)

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  daviesrob

  authored
  4a11e1f

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Commits on Jun 13, 2025

• Change optimisation for -fsanitize=address,undefined test build (#1924)

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  daviesrob

  authored
  33ddaaf

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Commits on Jun 12, 2025

• Work around old macOS SDKs hiding O_DIRECTORY

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  daviesrob

  authored and

  whitwham

  committed
  31006e1

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• Work around missing IN6_IS_ADDR_V4MAPPED on older glibc

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  daviesrob

  authored and

  whitwham

  committed
  88eed0f

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Commits on Jun 2, 2025

• CURLOPT_FTP_FILEMETHOD also wants a long argument

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  daviesrob

  committed
  a9109a8

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Commits on May 31, 2025

• CURLOPT_NOPROGRESS wants a long argument

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  jmarshall

  committed
  7f59b51

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Commits on May 30, 2025

• Merge version number bump and NEWS file from master

  daviesrob

  committed
  225cabb

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• Release 1.22

  daviesrob

  committed
  36f20e7

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Commits on May 29, 2025

• NEWS update

  daviesrob

  committed
  a208ba2

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Commits on May 28, 2025

• Fix typo

  julianhess

  committed
  01240a6

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• NEWS update

  

  daviesrob

  authored and

  whitwham

  committed
  e723d33

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• Skip test for -Wl,-z,nodlopen on OpenBSD as it breaks executables

  

  daviesrob

  authored and

  whitwham

  committed
  05e77d6

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• Adjust method of getting dirfd() on NetBSD

  

  daviesrob

  authored and

  whitwham

  committed
  208956f

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• Deal with interface visibility issues

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  daviesrob

  authored and

  whitwham

  committed
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Commits on May 27, 2025

• NEWS update

  

  daviesrob

  authored and

  whitwham

  committed
  1270c82

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• Fix indentation -- USE -b/-w TO DIFF/BLAME ACROSS THIS COMMIT

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  daviesrob

  authored and

  whitwham

  committed
  62ad3dd

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• Fix #if checks on PW_HAVE_EDGE and bugs revealed when using poll()

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  daviesrob

  authored and

  whitwham

  committed
  d78533f

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• Add poll debugging

  

  daviesrob

  authored and

  whitwham

  committed
  74e9a87

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• Use correct length for response string.

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  daviesrob

  authored and

  whitwham

  committed
  f96c62c

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• Fix use-after-pool_free bug

  

  daviesrob

  authored and

  whitwham

  committed
  968d69b

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• Fix casts

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  daviesrob

  authored and

  whitwham

  committed
  e1b141d

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• Check for AI_V4MAPPED and AI_ADDRCONFIG in configure

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  daviesrob

  authored and

  whitwham

  committed
  5d0cf76

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