After running the setup on a fresh MacOS Mojave installation i now get a long list of errors when opening Terminal or iTerm2

Warning: could not open directory 'Libary/Application Support/XXXXXXX :Operation not Permitted

same for many folders.
'Libary/IdentityServices'
'Libary/Messages'
'Libary/HomeKit
'Libary/Mail'
'Libary/Safari'
etc

i ran the full installation as it was a fresh install on my Mac Mini for testing purposes.

any ideas?